Papers/2610.02249
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Nearest-neighbour baselines for fingerprint prediction from MS/MS spectra under different assumptions

Khoo, Barzilay, Liu, Gupta

nearest-neighbourmolecular fingerprintingbenchmarking
2610.02249
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1h ago

Abstract

This paper systematically compares several nearest-neighbour variants for molecular fingerprint prediction from MS/MS spectra.

Reality Card

Core Claim

Nearest-neighbour retrieval methods provide strong baselines for molecular fingerprint prediction, matching or outperforming current deep learning models.

Method / Result

Several nearest-neighbour variants were compared, showing differing performance based on inference assumptions.

Limitations

The study's reliance on varying assumptions for inference may complicate reproducibility across different implementations.

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